Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 168 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 2/143 (1%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRE--NARRFERK 95
           L R+A  L ++ S A+DLVQ T  RA  S      E   +AWL +IL R+  +A R  R+
Sbjct: 15  LRRFAVSLTRNASSADDLVQSTLERAIISWADKRVEGDLRAWLFSILYRQFLDAHRRTRR 74

Query: 96  QFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIADILS 155
              +++      +A+ S +     +   +   +L+ E R LL    V G S +EIA+IL 
Sbjct: 75  YARMLEFFTGRDDAQPSVERTVIAQSTLQAFDQLNTEQRALLLWVSVEGLSYKEIAEILE 134

Query: 156 LNKNTVMTRLFRARNQLKEMMDG 178
           +   TVM+RL RAR  L+ + DG
Sbjct: 135 VPIGTVMSRLSRARQALRLLSDG 157