Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 69.7 bits (169), Expect = 3e-17
 Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 20/172 (11%)

Query: 22  DRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLI 81
           DR R++EA    +    +  A WL +D  +A+D VQE  LRA++  D L  E +A+ WL+
Sbjct: 6   DRTRQFEAAALPHLDAAWNLARWLLRDDQLADDAVQEAYLRAFRFFDGLRGE-SARPWLL 64

Query: 82  TILR-------RENARRFERKQFDLVDIDDHDYEAKYSDDE----------HHQNEWLQR 124
            I+R       R+N +  ++ +FD  ++ D +  +  S  E            Q E +  
Sbjct: 65  GIVRNACYDWMRQNRQLADQVEFD--ELRDSEAASAPSSPEAGDPARQWERRVQGERVNA 122

Query: 125 QILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMM 176
            I  L   YRE++ L+ +     E+IA I  +   TVM+RL RAR  L+E +
Sbjct: 123 AIDALPPVYREVIVLRELEEMRYEDIARIAGVPLGTVMSRLSRARAMLRESL 174