Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 171 a.a., RNA polymerase sigma-54 factor RpoN from Variovorax sp. SCN45

 Score = 65.1 bits (157), Expect = 7e-16
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 5/147 (3%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQ- 96
           L RYA  L  +   A+DLVQ+T  RA       +     +AWL T++    A +  R   
Sbjct: 13  LRRYARALTGNAWAADDLVQDTLERACSKWRLWVVGSDLRAWLFTVMHNIFASQVRRTPP 72

Query: 97  -FDLVDIDDHDYEAKYSDDEHHQNEW---LQRQILKLDVEYRELLFLQVVGGFSGEEIAD 152
              +V +DD  +E     D     +    LQR +++L  E R +L L  +   S  E+A 
Sbjct: 73  PHAVVPLDDLPHELHGGIDSGRGQDTSLDLQRCLMQLPEEQRAVLLLVTLEDLSYAEVAK 132

Query: 153 ILSLNKNTVMTRLFRARNQLKEMMDGS 179
           +L +   TVM+RL RAR +L+E+MDG+
Sbjct: 133 VLGIPAGTVMSRLSRARVRLQELMDGT 159