Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 199 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 18/150 (12%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILR-------RENAR 90
           L  YA  L ++   A+DLVQET L+AW+   S       KAW   ILR       R    
Sbjct: 4   LASYARSLARNSDTAQDLVQETLLKAWRHRASFEPGTNLKAWTFRILRNSFLSQVRRRGA 63

Query: 91  RFERKQFDLVDI---DDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSG 147
            +  +  +L+DI    + +     SD        ++R   +L  E +  + L  + G S 
Sbjct: 64  GYASETAELIDIPVASNQESVVTLSD--------VRRLWSRLTPEQQRCIQLIGIQGLSY 115

Query: 148 EEIADILSLNKNTVMTRLFRARNQLKEMMD 177
           EE A I  +   T+ +R+ R R  L+E++D
Sbjct: 116 EETATIEQVPVGTIKSRVLRGRQLLRELLD 145