Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 175 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 36  RDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITIL--------RRE 87
           R + RYA  L +D  +A+D+VQ+  +RA +  D    +++ + WL+ I+        RRE
Sbjct: 15  RAMRRYARALSRDHVVADDVVQDAVMRAIERRDQFQPDRSRRRWLLAIVHNVFISAKRRE 74

Query: 88  NARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSG 147
            A       F  + +D  D + +   D       + R    L    R ++ L VV G S 
Sbjct: 75  AAETRRNLAFAQIQVDHADPDQEVRADLMQ----VARAFADLPDHQRAVMHLTVVEGLSY 130

Query: 148 EEIADILSLNKNTVMTRLFRARNQLKEMMD 177
           +E AD+L +   TVM+RL RAR  L++  D
Sbjct: 131 QESADLLGIAVGTVMSRLARARATLRQDRD 160