Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 190 a.a., RNA polymerase sigma factor cnrH from Sphingobium sp. HT1-2

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 13/167 (7%)

Query: 23  RQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWL-- 80
           RQ  +  ++R +   ++R    L  +   A DL Q+  + A+  L      +  +AWL  
Sbjct: 21  RQSAFAEIMRRHQTAIFRLVRGLVGNAEEALDLTQDCFVSAFSHLRKYDGARPLRAWLSR 80

Query: 81  ITILRRENARRFER-----------KQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKL 129
           I I +  + RR +R              ++  + D    A  S +   + E L   I  L
Sbjct: 81  IAINKCRDWRRRQRVRQLFTFGSAPSDDEIEQVPDDAPSAHASAESKIEVERLSAAISAL 140

Query: 130 DVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMM 176
               RE+L L+ V G S  E A  LS++   V TRL+RAR +L E++
Sbjct: 141 PATLREVLMLRTVEGLSQSEAAKALSVSSKAVETRLYRARARLAEIL 187