Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 249 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 68.9 bits (167), Expect = 7e-17
 Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 9   GKKVSQRPVNNDMDRQRKYEALV---RAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWK 65
           G   + R   +D + +R+  A++   RA+ R L         +R  A+DLVQET L+AW 
Sbjct: 24  GLNQAPREALSDGEFKRELAAVIPHLRAFGRSL-------SGNRDTADDLVQETLLKAWA 76

Query: 66  SLDSLLDEKAAKAWLITILRRENARRFERKQF--DLVDID-DHDYEAKYSDDEHHQNEWL 122
           +          +AW   ILR     +  R +F  D  D+  D    A    D+H +   +
Sbjct: 77  ARARFQAGTNMRAWTFIILRNHYLSQMRRSRFRGDWDDLTADRLLAAPAGQDKHVELSDM 136

Query: 123 QRQILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMD 177
           QR +L+L    RE L L   GGF+ EE A+I  +   T+ +R+ R R  L+++++
Sbjct: 137 QRALLQLPQPQREALILVGAGGFAYEEAAEICGVAVGTIKSRVARGRAALEQILE 191