Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 173 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score = 58.5 bits (140), Expect = 6e-14
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 4/146 (2%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR----ENARRFE 93
           L RYA  L  + S AEDLVQ+  +RA+ + DS    +  + WL +IL         R   
Sbjct: 15  LMRYARRLTGNESDAEDLVQDALVRAYANADSYQRGRPLRVWLFSILHNVFVSGTRRAAV 74

Query: 94  RKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIADI 153
           R++F    +   +  A  + ++  +   ++  +  L  E + +L L  V G S ++ AD 
Sbjct: 75  RERFRADAVAQAEPVAAPAQEQMVRLHQIEAALTALPEEQQTVLHLVAVEGLSYQDAADA 134

Query: 154 LSLNKNTVMTRLFRARNQLKEMMDGS 179
           + +   T+++RL RAR +L+ + +G+
Sbjct: 135 IGIPIGTLISRLSRARAKLRALEEGA 160