Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 197 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 78.2 bits (191), Expect = 9e-20
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 25/188 (13%)

Query: 9   GKKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLD 68
           GK++S+       ++  ++EA +      LY +AY L  D   A DLVQET L+A++  D
Sbjct: 6   GKQLSKE------EKDARFEAELLPVLDPLYNFAYRLTLDEDDANDLVQETYLKAYRFFD 59

Query: 69  SLLDEKAAKAWLITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHH----------- 117
                  AKAWL  IL+      F +K      +D  + E  Y+ ++             
Sbjct: 60  YFEQGTNAKAWLFRILKNSFINEFRKKSKQPAKVDYSEVEGYYNSEDVEGESGVASTTDM 119

Query: 118 QNEWLQRQI--------LKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRAR 169
           + E +Q  I          L V++R ++ L  + GF+ EE+A IL +   TV +RL RAR
Sbjct: 120 RTESVQDLIGDEVASALNALPVDFRTVIILCDLEGFTYEEMAKILDIPIGTVRSRLHRAR 179

Query: 170 NQLKEMMD 177
           N LKE ++
Sbjct: 180 NSLKEKLE 187