Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 205 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 53.5 bits (127), Expect = 2e-12
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 15/151 (9%)

Query: 33  AYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILR------- 85
           AY   L  +      D++ A+D++Q+  L+ + + + L + K  KAWL  + R       
Sbjct: 26  AYEARLRGFVEKRVPDKAEADDILQQLYLKVYANCEQLQEVKNIKAWLYQVTRNAVYDFF 85

Query: 86  RENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILK-LDVEYRELLFLQVVGG 144
           RE++RR    + +L D        +      H+ E L    +K L  EY E L L  + G
Sbjct: 86  RESSRRQSIGELELPD-------GELPGSARHEVEALVEPFIKLLPAEYAEALRLSELEG 138

Query: 145 FSGEEIADILSLNKNTVMTRLFRARNQLKEM 175
            S +EIA  L ++ +   +R+ R R +LK +
Sbjct: 139 ISQKEIAGRLGISYSGAKSRVQRGRERLKAL 169