Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 171 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 56.2 bits (134), Expect = 3e-13
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 26  KYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILR 85
           ++  LV+   + L   A  L +D   A+DLVQET L+A  + D        KAWL TI+R
Sbjct: 5   EFNNLVQNVAQSLRPAAMNLTRDADDAKDLVQETMLKALTNRDKFKAGTNLKAWLYTIMR 64

Query: 86  RENARRFERKQFDLVDIDDHDYEAKYSDDEHH--QNEW--------LQRQILKLDVEYRE 135
                 + +      +ID  +Y    + DE +  QN+         + + I  L+ E+R 
Sbjct: 65  NTFINNYNKVIKRSSNIDSSEYLQYLNTDESYVTQNKGTATFVMNDINKAIAGLNEEHRT 124

Query: 136 LLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMM 176
              +  V GF   EIA+ L +   TV  R+  AR +LK+++
Sbjct: 125 PFMMYYV-GFKYLEIAEKLQIPIGTVKNRIHIARKELKKVL 164