Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., hypothetical protein from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 52.4 bits (124), Expect = 6e-12
 Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 27  YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR 86
           +  L + Y   + RY   L  D  + +D +Q+   + WKS + L +  + K +L+   R 
Sbjct: 19  FTLLYKRYAPVMLRYGGKLTHDNDLVKDCIQQVFFQVWKSREKLSNPPSVKNYLLKSFRC 78

Query: 87  ENAR------RFERKQFDLVDIDDHDYEAKYSDDEHHQ--NEWLQRQILKLDVEYRELLF 138
           E  +      R E    DL    +  YEA     +  +   + +   + +L    RE++F
Sbjct: 79  ELGKKASFKSRHEPLPEDLSLGAEASYEAALISSQSFELIQQKVHHLLSRLPERQREVIF 138

Query: 139 LQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMD 177
           L+   G   +EIADI+ +++ +V    ++A ++L  + +
Sbjct: 139 LKYYTGLQYDEIADIMEIDQKSVYKLTYKAIDKLHRLFN 177