Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 202 a.a., RNA polymerase subunit sigma-24 from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 55.8 bits (133), Expect = 5e-13
 Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 16/174 (9%)

Query: 24  QRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITI 83
           ++ Y  L+  Y + +Y     + ++   AEDL  E   +A+K+L     E A   WL  I
Sbjct: 27  EKAYAELMSIYKKPVYHVVLKMVRNADDAEDLTIEAFAKAFKNLHKFNPEYAFSTWLFRI 86

Query: 84  LRR----------------ENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQIL 127
                              ++A + +      +D  D +   +    ++ + E +Q  + 
Sbjct: 87  ATNNCIDFIRKNRIKTMSIDSAIKIDNGDEITIDFKDKNLNPQEEAIKNQKIEIMQYVVA 146

Query: 128 KLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSEH 181
           KL  +Y+ L+ L+     S EEIA  L+    TV  +L RAR  L +M+   +H
Sbjct: 147 KLPEKYQRLVTLRYFNELSYEEIATELNAPLGTVKAQLHRARELLYDMVKNKKH 200