Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 167 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 2/143 (1%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQF 97
           L RY+  L  +R  A+DLVQ+T  RAW   +        +AWL +I+   +     R + 
Sbjct: 14  LRRYSRALVNNRDDADDLVQDTLERAWAKSNLWGGVADMRAWLFSIMHNLHVDGVRRPRL 73

Query: 98  DLVDIDDHDYEAKYSDDEHHQNEWLQRQILK--LDVEYRELLFLQVVGGFSGEEIADILS 155
             V +DD   E   +  +  +   L  Q     L VE +E+L L  +   +  ++A  L 
Sbjct: 74  HTVTMDDDTPEVPVAPTQTDRLAVLDLQAALDLLPVEQKEVLLLVTLEDMAYADVAQALG 133

Query: 156 LNKNTVMTRLFRARNQLKEMMDG 178
           +   TVM+RL R R +L+ +M+G
Sbjct: 134 IPIGTVMSRLSRGRERLRGLMEG 156