Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 177 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

 Score = 48.5 bits (114), Expect = 7e-11
 Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 9/153 (5%)

Query: 33  AYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITI--------L 84
           A+  +L R+   +  +  +AEDLVQET LRA  +  +         WL  I         
Sbjct: 2   AHRGELLRFVQGMVGNAHLAEDLVQETLLRAVAAQQAFAGRSRPLTWLSAIALNALRDHF 61

Query: 85  RRENARRFE-RKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVG 143
           RR   RR E     D   + D   +A  +  +    + +   +  L    RE+L L  +G
Sbjct: 62  RRPATRREESAAPEDFAGLADQCEDAVTALMKAEMGDCITAHLSALPDRLREVLVLHDMG 121

Query: 144 GFSGEEIADILSLNKNTVMTRLFRARNQLKEMM 176
           G    E+A  L + +      L RAR  L+E +
Sbjct: 122 GAGHAEVAAALGITEGNARVLLHRARAALRERL 154