Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 192 a.a., RNA polymerase sigma factor, sigma-70 family from Enterobacter asburiae PDN3

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILR-----RENARRF 92
           L+RY   L ++R IAE+LVQ TC+RA +             WL  IL         AR  
Sbjct: 38  LWRYGLVLSRNRDIAEELVQSTCVRALERSSQYTPGTRIDRWLFAILHSIWISELRARHV 97

Query: 93  ERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIAD 152
            + Q  +   +    + +  D+       + +++  L    R  +FL  V GF+ +E A+
Sbjct: 98  RQGQGFVASDELLAPDTRQQDETRLHYMKVMQRVNALPEAQRNAVFLVYVEGFTYQEAAE 157

Query: 153 ILSLNKNTVMTRLFRARNQLKEMMDGSEHYPEQQN 187
            L++   TVM+RL  AR +L    D      E+++
Sbjct: 158 TLAVPIGTVMSRLATARARLARSADALPPVKEKRS 192