Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Enterobacter asburiae PDN3

 Score = 48.9 bits (115), Expect = 5e-11
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 15/134 (11%)

Query: 54  DLVQETCLRAWKSLDSLLDEKAAKAWL--ITILRREN-----ARRFERKQFDLVDIDDHD 106
           D+VQE+ ++A+++LDS   + A   WL  I +   +N      RR      D +D ++ +
Sbjct: 48  DVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIDAENFE 107

Query: 107 YEAKYSDDEHHQNEWLQ--------RQILKLDVEYRELLFLQVVGGFSGEEIADILSLNK 158
                 +  + +N  L         R I  L  + R  + L+ + G S EEIA I+    
Sbjct: 108 SGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPV 167

Query: 159 NTVMTRLFRARNQL 172
            TV +R+FRAR  +
Sbjct: 168 GTVRSRIFRAREAI 181