Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 187 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 58.2 bits (139), Expect = 9e-14
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 25  RKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITIL 84
           R ++ L   Y + L+ YAY + +DR  AED+VQE  ++ W++  S  + +    +    +
Sbjct: 19  RAFDLLFDRYWKRLFEYAYKMLQDREQAEDVVQEVFVQLWENA-SNREIQHLSGYFFRAV 77

Query: 85  RRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQN------EWLQRQILKLDVEYRELLF 138
           + + A     K++  VD D  + E     +E  Q       + L+++I +L  + +E+ +
Sbjct: 78  KYQVANTVRNKKWH-VDWDSLELEGIMLTEETEQPQDTKLLQQLEQRIEQLPPKCKEIFY 136

Query: 139 LQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMD 177
           L    G++ +EIA  L+++  TV   L RA   LK  +D
Sbjct: 137 LNKKHGYTAKEIAASLNISPRTVEGHLQRALKSLKADLD 175