Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 185 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 60.1 bits (144), Expect = 2e-14
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 27  YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR 86
           ++ L   Y+++L  YA+    D S AEDLVQ   +  W++L+S   +     +  T ++ 
Sbjct: 20  FDYLYHRYYKNLVNYAFTFLLDSSEAEDLVQNLFIHFWENLESFQLKGTLDGFFYTSVKN 79

Query: 87  ENARRFERKQFDLVDIDDHDY--------EAKYSDDEHHQNEWLQRQILKLDVEYRELLF 138
               +   K  D+ D     Y          +   D++   E L   I  L V+ RE++ 
Sbjct: 80  RCLNKL--KSIDVYDKHKILYIEAMLVHLSREEEIDKNVLEEELLMAISNLPVQAREIIV 137

Query: 139 LQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMD 177
           L+   G    EIA+ L+L++NTV T+L R +++L+  M+
Sbjct: 138 LKYFKGQKIAEIAETLNLSENTVKTQLKRGKSKLRNEMN 176