Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 203 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 53.5 bits (127), Expect = 2e-12
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 7/164 (4%)

Query: 27  YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR 86
           Y  L   Y   +Y  +  +      AE++VQE  L  WK  + L  + +  A++ +I+R 
Sbjct: 28  YYHLYERYASKIYHVSRKMELSHHDAEEVVQEVFLYLWKKRNELRSDLSINAYIFSIVRS 87

Query: 87  ENARRFERKQ----FDLVDIDDHDYEAKYSDDE---HHQNEWLQRQILKLDVEYRELLFL 139
               R ++K     F    +  +   +  ++D       + +  + I  L V+ RE+  +
Sbjct: 88  LVINRCQKKARFTAFQQYSVPMNKDFSNVTEDTVIYRDLHAYASKAIDTLPVKQREVFIM 147

Query: 140 QVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSEHYP 183
           + V   + EEIA  L+L+  TV  +L+RA   L+   + +E  P
Sbjct: 148 KTVNHMTAEEIAAQLNLSVRTVENQLYRATKSLRHRFNAAEEVP 191