Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 187 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 60.1 bits (144), Expect = 2e-14
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 7/166 (4%)

Query: 14  QRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDE 73
           +  +N  +D Q  +E+  +++ + LY YA  L KD   AE++VQ   L+ W+  DS+   
Sbjct: 6   ENTINAPIDEQL-FESTFKSHFQALYAYACMLVKDEDEAEEIVQTVFLKIWEKRDSITIA 64

Query: 74  KAAKAWLITILRRE--NARRFERKQFDLVDIDDHD-YEAKYSDDEHHQNEW---LQRQIL 127
            + KA+L  ++ R   N  R ++ +    DI  H   +A    DE H +E    L+  + 
Sbjct: 65  SSLKAYLYQMVYRNSMNYLRHQKVKQKHHDITLHQANDAGPQMDEGHDHELMDALKNALQ 124

Query: 128 KLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLK 173
           +L  + R++  L        +EIAD L ++  TV T + +A   L+
Sbjct: 125 ELPEKCRKVFLLSRYESLKYQEIADRLGISVKTVETHMGKALKHLR 170