Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 198 a.a., RNA polymerase sigma-70 factor, Bacteroides expansion family 1 from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 24  QRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITI 83
           +  +  L  AY   +Y       K   +A D+VQ+T L+ W     +   K  K  ++T 
Sbjct: 22  EHAFSELFEAYSSQVYYIGLKYLKSVDLANDVVQDTFLKLWNYRAHIDPSKPIKPLIVTF 81

Query: 84  LRR---ENARRFERKQFDLVDIDDHDYEAKYSDDE----HHQNEWLQRQILKLDVEYREL 136
            +R    N R  +RK    ++I ++        +E    +  ++  Q  ++ L    RE+
Sbjct: 82  AKRIILNNIRDEKRKILKHLEIFENSNSFSNKTEEQVIYNETHQVYQAAVMALPERRREV 141

Query: 137 LFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSEHY 182
             L+ V G S EE A+ L L+ NTV ++  +A   ++E +  S++Y
Sbjct: 142 FLLKSVQGKSNEETAEELGLSINTVKSQYTKALQAIREFV--SKYY 185