Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 169 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 58.5 bits (140), Expect = 6e-14
 Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)

Query: 31  VRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRENAR 90
           +  + + L  +A  L KD   A DL+QET L+A+ + D   D    +AWL TI++     
Sbjct: 10  INEHSKSLKPFALRLTKDVDDANDLLQETMLKAYTNRDKFSDGTNLRAWLYTIMKNTFFT 69

Query: 91  RFER--KQFDLVDIDDHDYEAKYSD----DEHHQN---EWLQRQILKLDVEYRELLFLQV 141
           R++R  ++   VD  D+ +     D    +  H     + +   I  L+ +YR   F+  
Sbjct: 70  RYQRMVRRATFVDSTDNLHYINSGDVSIENRAHSKFAMDDINYCINHLNADYR-TPFMMY 128

Query: 142 VGGFSGEEIADILSLNKNTVMTRLFRARNQLKE 174
             GF  +EIAD L+L   TV  R+  AR  LK+
Sbjct: 129 FKGFKYQEIADDLNLPIGTVKNRIHLARKILKD 161