Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 162 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 67.8 bits (164), Expect = 1e-16
 Identities = 40/153 (26%), Positives = 82/153 (53%), Gaps = 3/153 (1%)

Query: 27  YEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRR 86
           +EA + +    LYR AY   K R  AED VQE   +AW   + L   +    W++ +++ 
Sbjct: 5   FEAYIWSLRSKLYRMAYLWLKSRDEAEDAVQEALEKAWHQREVLQKMENPTGWMVKVVKN 64

Query: 87  ENARRF-ERKQFDLVDIDDHDYEAKYSDDEHHQN--EWLQRQILKLDVEYRELLFLQVVG 143
           ++ ++  ER+++ +++ +D   E   ++ E      + + R + +L  + +E+  L+ V 
Sbjct: 65  QSLQKLRERQKWVVIEAEDEIPEVPVAETEEVSPAVKLVFRFLRELPEKQQEVFQLREVE 124

Query: 144 GFSGEEIADILSLNKNTVMTRLFRARNQLKEMM 176
           G + EEIA+ + ++ + V   +FRAR +L+  +
Sbjct: 125 GLTYEEIAEYMDISMDQVKVNMFRARKKLQSFL 157