Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 189 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 36/132 (27%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 47  KDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQFDLVDID-DH 105
           KD  +AED++ E  ++ ++ LD    + + + W+  I+  ++     + Q   ++++ DH
Sbjct: 45  KDHDLAEDVMIEGFMKIFEKLDQYEAKGSFEGWMKRIIVTQSLLTLRKNQKLSMEVNLDH 104

Query: 106 DYEA---KYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVM 162
           + E    +Y   +   NE L+  I  L + Y+ +  L  + G+S  EI+D+L +++NT  
Sbjct: 105 ELEKSLPQYEFVDMEANELLE-MIHALPLGYQTVFNLYAIEGYSHAEISDLLGISENTSK 163

Query: 163 TRLFRARNQLKE 174
           ++L RAR  LK+
Sbjct: 164 SQLSRARAMLKQ 175