Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 196 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 78.2 bits (191), Expect = 9e-20
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 21/182 (11%)

Query: 10  KKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDS 69
           KK S +  NN  D +         +   +Y +A+ L  D   A+DLVQ+T L+A++ ++S
Sbjct: 7   KKYSDKEKNNIFDHE------FMPHIDSMYNFAFRLTFDEDDAKDLVQDTYLKAYRFINS 60

Query: 70  LLDEKAAKAWLITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQN---------- 119
                 AKAWL  IL+      + +K      +D  + E  Y+ D    N          
Sbjct: 61  FEQGTNAKAWLFRILKNSFINEYRKKSKQPSKVDYQEVETYYNSDSVDYNITSDLRVDAV 120

Query: 120 -----EWLQRQILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKE 174
                + +   +  L V++R ++ L  + GF+ EE+A IL +   TV +RL RARN LKE
Sbjct: 121 KDMLGDEISNALNSLAVDFRTVIILCDLEGFTYEEMAKILDIPIGTVRSRLHRARNLLKE 180

Query: 175 MM 176
            +
Sbjct: 181 KL 182