Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., ECF family RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score = 63.9 bits (154), Expect = 2e-15
 Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 6/149 (4%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQF 97
           L  +A    ++     DLVQET LR ++SL       A K+WL TILR     R++  + 
Sbjct: 33  LTAFARRFVRNEDDVNDLVQETMLRGFRSLQGFTPGTALKSWLFTILRNTFCTRYKVSRR 92

Query: 98  DLVDID---DHDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIADIL 154
           + V +    +         +   Q++ + R IL+LD + ++ L L + GG S  + A I 
Sbjct: 93  ECVGLPVGIEQSMSIPADQEWRLQHQEVMRAILELDKDQKKALLL-IAGGTSYSDAAAIC 151

Query: 155 SLNKNTVMTRLFRARNQLKEMMD--GSEH 181
                T+ +R+ RAR  L++ +D  G+ H
Sbjct: 152 GCRVGTIKSRVNRARESLRQKLDRVGTPH 180