Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 120 a.a., ECF family RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score = 48.5 bits (114), Expect = 4e-11
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 4/120 (3%)

Query: 61  LRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQFDLVDID---DHDYEAKYSDDEHH 117
           LR  ++L       A K+WL TILR     R++  + + V +    +       S + H 
Sbjct: 2   LRGLRALHGFTPGTALKSWLFTILRNTFCTRYKVSKRECVGLPVGIEQTMSTPASREWHV 61

Query: 118 QNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMD 177
           Q++   R I  LD + ++ L L V GG S  + A I      T+ +R+ RAR  L+  +D
Sbjct: 62  QHQEAMRAIRDLDKDQKKALLL-VAGGTSYSDAAAICGCRVGTIKSRVNRARESLRRNLD 120