Pairwise Alignments

Query, 188 a.a., RNA polymerase subunit sigma from Vibrio cholerae E7946 ATCC 55056

Subject, 168 a.a., ECF family sigma factor from Agrobacterium fabrum C58

 Score = 56.2 bits (134), Expect = 3e-13
 Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 6/143 (4%)

Query: 38  LYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWLITIL---RRENARRFER 94
           L RYA  L  DR  A+DLVQ+   RA +       +   + WL  +L    R N R  +R
Sbjct: 15  LRRYANALTHDRDTADDLVQDCLERAIRKKALWRPQGPLRPWLYRVLVNVYRNNLRGSKR 74

Query: 95  KQFDLVDIDD--HDYEAKYSDDEHHQNEWLQRQILKLDVEYRELLFLQVVGGFSGEEIAD 152
           +    + IDD         +         + R I KL  E+RE L L VV G +  E A+
Sbjct: 75  RP-QQIPIDDVTEQLVVPAAQTGRVALAEMARAIEKLSGEHRETLLLVVVEGLTYAEAAN 133

Query: 153 ILSLNKNTVMTRLFRARNQLKEM 175
           IL +   T+M+RL RAR  L  M
Sbjct: 134 ILEIPLGTLMSRLGRARTALARM 156