Pairwise Alignments

Query, 428 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  109 bits (272), Expect = 2e-28
 Identities = 106/444 (23%), Positives = 183/444 (41%), Gaps = 78/444 (17%)

Query: 1   MNNMRLFKKSLLAVTV---TLATQQAFAAGFQLNAQSATGLGRAFAGDAVIADNAAVMSR 57
           MNN +   + LL + +    +AT  A A GF      A G GRAFAG ++  ++ +    
Sbjct: 1   MNNKKQHVQVLLGLALMGGAMATAPAQAGGFSTPTYGAPGWGRAFAGGSLFKNDPSSAYN 60

Query: 58  NPAAMALFDEMALSLGFETITTMIDVKN--VSYRG---------------VLGNSVSVQD 100
           NPAAMA  +        +     I  K     Y G                   +V+  D
Sbjct: 61  NPAAMAFVEHNVAQFTVDYARIKIKYKGDASDYAGNPISNTPLDANGFPDGTATTVNNND 120

Query: 101 TDDVGGTSVAPNIHLIVPVNEQFAWGVNAYSNFGTKTEFSDSYPASEYGGLTDVKSFNLG 160
               G T+  P   +++P+ ++FA+G++     G ++ + ++    ++    D K   +G
Sbjct: 121 GGQGGFTAWLPTGFMVMPLGDRFAFGLSQVVPQGMRSTWDENSKLRDFA--VDTKIETVG 178

Query: 161 LAG--SYRVNKEWSFGAGLDLIYGQGTMKRIAG--TSFPASTIVVNPTTVIPARGTSLLN 216
           L G  S++VN ++S G G+ + + +G + +     ++   S  V+         G +L+ 
Sbjct: 179 LTGSLSFKVNDQFSIGGGVIVQHSKGFVSQNVDLLSAAAVSDSVLGGINFPSDVGHALMR 238

Query: 217 VDKADGWAVGFNLGTVYEMDENNRFGLSYR-------------YSPEFK----------- 252
           V K D  + G+  G V++  E +  GL+Y              Y+ +F            
Sbjct: 239 V-KVDNISAGWFTGVVWKPTERDTLGLNYHAKIKNKMTGKYNIYADQFSYNLMTQPSPFG 297

Query: 253 ---------------AKDDYGQEITLPLPDIAEFSGFHKIENTQFAVHYSVQWIGWSAFD 297
                          A D     + L +P  A     H+  N +F +  SV W  WS+F 
Sbjct: 298 GSGTLVNTAYPGLELAPDGAHASVQLDIPATAGLDWVHQF-NDRFTLGASVTWTEWSSFK 356

Query: 298 KIEFRNLVTSRSSVGALTKGSYDKMYEWQDGWHYSIGGTYYLNSDWTLRAGYMYD-TSAQ 356
            +   +  T+  S+           Y +++ W YS+GG Y +  + TLRAG   D T  +
Sbjct: 357 DLTLNSGGTTIVSI----------PYNYKNTWMYSLGGDYRVTDELTLRAGVALDQTPTR 406

Query: 357 DSRTSISVPDSDRQWLSAGFTYNI 380
           +S     +PD DR +LS G  Y++
Sbjct: 407 NSTRDPRIPDGDRTFLSLGAGYDV 430