Pairwise Alignments

Query, 428 a.a., long-chain fatty acid transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., long-chain fatty acid outer membrane transporter (RefSeq) from Escherichia coli BW25113

 Score =  269 bits (688), Expect = 1e-76
 Identities = 154/440 (35%), Positives = 241/440 (54%), Gaps = 54/440 (12%)

Query: 1   MNNMRLFKKSLLAVTVTLATQQAFAAGFQLNAQSATGLGRAFAGDAVIADNAAVMSRNPA 60
           M+   LF KS LAV V L + QA++AGFQLN  S++GLGRA++G+  IAD+A  +SRNPA
Sbjct: 1   MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPA 60

Query: 61  AMALFDEMALSLGFETITTMIDVKNVSYRGVLGNSVSVQDTDDVGGTSVAPNIHLIVPVN 120
            + +FD    S G   I   +   N+S     G S+     D++  T+  PN+H + P+N
Sbjct: 61  LITMFDRPTFSAGAVYIDPDV---NISGTSPSGRSLKA---DNIAPTAWVPNMHFVAPIN 114

Query: 121 EQFAWGVNAYSNFGTKTEFSDSYPASEYGGLTDVKSFNLGLAGSYRVNKEWSFGAGLDLI 180
           +QF WG +  SN+G  TEF+D+Y     GG TD+++ NL L+G+YR+N  WSFG G + +
Sbjct: 115 DQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAV 174

Query: 181 YGQGTMKRIAGT--SFPASTIVVNP---TTVIPARGTSLLNVD--------KADGWAVGF 227
           Y +  ++R AG      A  I+ +P   T    A   +   +D          + W  G+
Sbjct: 175 YARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGW 234

Query: 228 NLGTVYEMDENNRFGLSYRYSPEFKAKDDYGQE------------------------ITL 263
           N G +YE+D+NNR+ L+YR   +   K +Y  +                        +TL
Sbjct: 235 NAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTL 294

Query: 264 PLPDIAEFSGFHKIENTQFAVHYSVQWIGWSAFDKIEFRNLVTSRSSVGALTKGSYDKMY 323
            LP++ E SG+++++  Q+A+HYS+ +  WS F +++     TS S         + K  
Sbjct: 295 NLPEMWEVSGYNRVD-PQWAIHYSLAYTSWSQFQQLK----ATSTSG-----DTLFQKHE 344

Query: 324 EWQDGWHYSIGGTYYLNSDWTLRAGYMYDTSAQDSRT-SISVPDSDRQWLSAGFTYNIDD 382
            ++D +  ++G TYY + +WT R G  +D S   ++  SIS+PD DR WLSAG TY  + 
Sbjct: 345 GFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNK 404

Query: 383 KSNVDFGFTYLMGKDVAVSE 402
            ++VD G +Y+ G+ V ++E
Sbjct: 405 DASVDVGVSYMHGQSVKINE 424