Pairwise Alignments

Query, 432 a.a., aromatic hydrocarbon degradation protein from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  132 bits (331), Expect = 3e-35
 Identities = 116/485 (23%), Positives = 204/485 (42%), Gaps = 66/485 (13%)

Query: 5   KTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLTY 64
           + LL  A+  G A  +   QA GF    Y A G GRA+AG +   ++ S+ + NPA + +
Sbjct: 9   QVLLGLALMGG-AMATAPAQAGGFSTPTYGAPGWGRAFAGGSLFKNDPSSAYNNPAAMAF 67

Query: 65  LEGTQVSAGAIYVNPNVDVEGTVNHAQ---LGKTHASSNDF----------------AHD 105
           +E         Y    +  +G  +      +  T   +N F                   
Sbjct: 68  VEHNVAQFTVDYARIKIKYKGDASDYAGNPISNTPLDANGFPDGTATTVNNNDGGQGGFT 127

Query: 106 AVIPNFYLSHQLNEQMALGFALGTNYGMETDLGTEFAASHFGNQASVISKEANLNIAYQI 165
           A +P  ++   L ++ A G +     GM +          F     + +     ++++++
Sbjct: 128 AWLPTGFMVMPLGDRFAFGLSQVVPQGMRSTWDENSKLRDFAVDTKIETVGLTGSLSFKV 187

Query: 166 LPQLSIGGGVRYVMGEGHFGATAPAKNLIRHPVTNNVM---TLPK--GTTLKYMEGEDNS 220
             Q SIGGGV     +G          L    V+++V+     P   G  L  ++ ++ S
Sbjct: 188 NDQFSIGGGVIVQHSKGFVSQNVDL--LSAAAVSDSVLGGINFPSDVGHALMRVKVDNIS 245

Query: 221 WGWQVGSAWQINQDHRVGFAYKSEVVMDFEG----HAEGVSYG----------------S 260
            GW  G  W+  +   +G  Y +++     G    +A+  SY                 +
Sbjct: 246 AGWFTGVVWKPTERDTLGLNYHAKIKNKMTGKYNIYADQFSYNLMTQPSPFGGSGTLVNT 305

Query: 261 YKPGM----------MSVTLPATAELASFHQLNDQWAIHASINWTDWSSFKELTAVFPEK 310
             PG+          + + +PATA L   HQ ND++ + AS+ WT+WSSFK+LT      
Sbjct: 306 AYPGLELAPDGAHASVQLDIPATAGLDWVHQFNDRFTLGASVTWTEWSSFKDLTLNSGGT 365

Query: 311 SDLIKSENWEDNYRFALGTTYQYDAKLALRAGVAYDTSAVDDKNRTATIPETDRTWVSVG 370
           + +    N+++ + ++LG  Y+   +L LRAGVA D +   +  R   IP+ DRT++S+G
Sbjct: 366 TIVSIPYNYKNTWMYSLGGDYRVTDELTLRAGVALDQTPTRNSTRDPRIPDGDRTFLSLG 425

Query: 371 GSY--VATPQLTLDAGFTYIFAKDATINEPRDASDQTAAAIGGA-FTGNVSGNVWLIGVQ 427
             Y   A   L++D  +++ F ++  +        Q    +GGA   G    +  ++ V 
Sbjct: 426 AGYDVKAIKGLSVDLAYSHQFVQEVKL------KTQNVDRLGGASLNGKAESSGDVVSVS 479

Query: 428 ANYRF 432
           A Y F
Sbjct: 480 ATYAF 484