Pairwise Alignments

Query, 432 a.a., aromatic hydrocarbon degradation protein from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., long-chain fatty acid outer membrane transporter (RefSeq) from Escherichia coli BW25113

 Score =  238 bits (606), Expect = 4e-67
 Identities = 143/465 (30%), Positives = 233/465 (50%), Gaps = 55/465 (11%)

Query: 3   TNKTLLS-CAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAM 61
           + KTL +  A+A  +A +ST   +AGFQL E+S++GLGRAY+GE A+AD+A    RNPA+
Sbjct: 2   SQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSGEGAIADDAGNVSRNPAL 61

Query: 62  LTYLEGTQVSAGAIYVNPNVDVEGTVNHAQLGKTHASSNDFAHDAVIPNFYLSHQLNEQM 121
           +T  +    SAGA+Y++P+V++ GT   +  G++  + N  A  A +PN +    +N+Q 
Sbjct: 62  ITMFDRPTFSAGAVYIDPDVNISGT---SPSGRSLKADN-IAPTAWVPNMHFVAPINDQF 117

Query: 122 ALGFALGTNYGMETDLGTEFAASHFGNQASVISKEANLNIAYQILPQLSIGGGVRYVMGE 181
             G ++ +NYG+ T+    +A    G    + +   NL+ AY++    S G G   V   
Sbjct: 118 GWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYAR 177

Query: 182 GHFGATAPAKNLIRHPVTNNVMTLPKG------------------TTLKYMEGEDNSWGW 223
                 A     +   V   +M  P G                  T + ++ G    +GW
Sbjct: 178 AKIERFAGDLGQL---VAGQIMQSPAGQTQQGQALAATANGIDSNTKIAHLNGNQWGFGW 234

Query: 224 QVGSAWQINQDHRVGFAYKSEVVMDFEGHAEG---------------VSYGSYKPGMMSV 268
             G  +++++++R    Y+SEV +DF+G+                   + G+ + G +++
Sbjct: 235 NAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYGLPIPTATGGATQSGYLTL 294

Query: 269 TLPATAELASFHQLNDQWAIHASINWTDWSSFKELTAVFPEKSDLI-KSENWEDNYRFAL 327
            LP   E++ +++++ QWAIH S+ +T WS F++L A       L  K E ++D YR AL
Sbjct: 295 NLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATSTSGDTLFQKHEGFKDAYRIAL 354

Query: 328 GTTYQYDAKLALRAGVAYDTSAVDDKNRTATIPETDRTWVSVGGSYVATPQLTLDAGFTY 387
           GTTY YD     R G+A+D S V  +NR+ +IP+ DR W+S G +Y      ++D G +Y
Sbjct: 355 GTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKDASVDVGVSY 414

Query: 388 IFAKDATINEPRDASDQTAAAIGGAFTGNVSGNVWLIGVQANYRF 432
           +  +   INE             G +     G  WL G   NY F
Sbjct: 415 MHGQSVKINE-------------GPYQFESEGKAWLFGTNFNYAF 446