Pairwise Alignments

Query, 703 a.a., AsmA family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., outer membrane assembly protein AsmA from Escherichia coli ECRC62

 Score =  166 bits (419), Expect = 4e-45
 Identities = 160/703 (22%), Positives = 286/703 (40%), Gaps = 92/703 (13%)

Query: 1   MKKLFISLLGLVVLIVGALLALVLLVNPNQFKPLIVEQAKKQTGLDLVIEGDIGWQFFPS 60
           M++   +L+ L+V++V  L ALVLLVNPN F+  +V+Q   ++G  L ++G + W  +P 
Sbjct: 1   MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQ 60

Query: 61  IGFELGKTELKNPQGFASPNLFKVESVGIDVSVMPLLDKQLKIGNIRLDGAEFHLETLKD 120
           +    G+  L   QG + P L + +++ +DV+++PLL  QL +  + L GA         
Sbjct: 61  LSILSGRMSL-TAQGASQP-LVRADNMRLDVALLPLLSHQLSVKQVMLKGAVI------- 111

Query: 121 GRSNLDALTQAQSKPASAPATTDSAPASQPSSSEPAAAWSIELGGVSVSNAVLEITDKKA 180
                      Q  P +    ++ AP +   ++ P                  +++D + 
Sbjct: 112 -----------QLTPQTEAVRSEDAPVAPRDNTLP------------------DLSDDRG 142

Query: 181 GSHTKLYDVQ-LSVAEFVPDNWTKATFAAKGDKDQQKFAAQGEAEVRLSADFKQYALRNI 239
            S    +D+  L VA+ V                      Q E       D +Q  +RNI
Sbjct: 143 WS----FDISSLKVADSV-------------------LVFQHE-------DDEQVTIRNI 172

Query: 240 NLDASFSDPSNQIDSAKLKLDTFEFDKANALTFSVAGKAADMKLNAQGSASLMVNQAISK 299
            L     DP ++         +FEF         V     D+ ++  G+           
Sbjct: 173 RLQME-QDPQHR--------GSFEFSGR------VNRDQRDLTISLNGTVDASDYPHDLT 217

Query: 300 VGLDALKLQAELEGAALPQSPMKLSLDSQIAFDLTQNHLSVLLNKLTANALSFDGKADVT 359
             ++ +  Q  L+GA LP+  ++     Q  +  +   LS     LTAN  +  G+A VT
Sbjct: 218 AAIEQINWQ--LQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVT 275

Query: 360 LADIPKVRFNLHSPEIDLDAFLGTKAQESQPAPAKEAAASSSSAPATNAPAEV-EPDLSA 418
           L + P+ +  L  P+++LD  +      +    A +   S S+ P     + + EP    
Sbjct: 276 LTEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQG 335

Query: 419 LKALDVAGEISIDKFKASNAHLQNVKANFAVNRGVVDLKSFTANLYQGSVQASAQVDARK 478
           L+       +     +    +  +V        G++++      L  G V     +DA  
Sbjct: 336 LQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATS 395

Query: 479 TPATYSVKKQIKGVQVKPLLKDVLNNEMLEGTGNIDVNVQGQSLTPSGIQKNLVGTVAIN 538
                + + +++ V++  +LK       L G  ++  +  G  +     + N  G   + 
Sbjct: 396 INPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVE 455

Query: 539 FADGAVKGINVAHLIRTHYAKIKG--QNVEEADAVKKTDFSAMTTTLKLNKGEVTTNDLN 596
             D  ++G+N   +I+    +  G  +  E  D V + D    TT L L  G VT ND+ 
Sbjct: 456 MTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLD--RFTTDLTLKDGVVTLNDMQ 513

Query: 597 MQSPLLRIHGEGKANYLQQNVDFLVRTSIVGTLEGQGGKSLDELRDVTIPINISGAWSDP 656
            QSP+L + GEG  N   Q  D      +VG   G+  K +D L++  +P+ + G W   
Sbjct: 514 GQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWSGE-SKLIDFLKETPVPLRVYGNWQQL 572

Query: 657 KFRLVFDDVLKQKAKKEVDRGVEKLTDKIKDEDTKKAVDGLLK 699
            + L  D +L++  + E  R +    ++ KD    K V  LL+
Sbjct: 573 NYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLE 615