Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  283 bits (723), Expect = 1e-80
 Identities = 162/388 (41%), Positives = 230/388 (59%), Gaps = 20/388 (5%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED   + +  R  L      ++  G+ ++A E       DLI+ DLRLP   G +++ 
Sbjct: 6   IVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTELI- 64

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRK------ 114
              +     P++ MT++ S+ +AV++M+ GA D++ KP + D +   V   +R       
Sbjct: 65  ---KLGQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQSPSS 121

Query: 115 -------ASKL--KNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTG 165
                  A K   K  VDN N    G IGS   MQ +Y  I   A + +++ I GESGTG
Sbjct: 122 APAEQRPAGKAADKPGVDNSNGEI-GIIGSCPPMQDLYGKIRKVAPTDSNVLIQGESGTG 180

Query: 166 KEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADG 225
           KE+ A A+H  SKR   P I++NCAAIP+ LIESELFGH KGAFTGA+  R G  EAADG
Sbjct: 181 KELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAADG 240

Query: 226 GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRF 285
           GTLFLDE+ E+ L+ Q +LLR +Q G  ++VGS + + VDVR + AT+RD     + G+F
Sbjct: 241 GTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQF 300

Query: 286 REDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEW 345
           REDLYYRL+VI L LP LR RG DV EIA++ L   S    +  ++ + +  +  R Y W
Sbjct: 301 REDLYYRLHVIALKLPALRERGADVNEIAHAFLLRQSARINRTDLKFAPDAEQAIRHYSW 360

Query: 346 PGNVRQLQNVLRNVVVLNEGREITLDML 373
           PGNVR+L+N +   V+L+E  EI+ ++L
Sbjct: 361 PGNVRELENAVERAVILSESPEISAELL 388