Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., nitrogen regulation protein NR(I) from Pseudomonas simiae WCS417

 Score =  288 bits (737), Expect = 3e-82
 Identities = 174/461 (37%), Positives = 257/461 (55%), Gaps = 15/461 (3%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D  S+  +    L    +      +    +  + R++PD+I+ D+R+P  +G+D+L 
Sbjct: 9   IVDDDRSIRWVLEKALQQEGMTTQSFDSADGVMSRLARQQPDVIISDIRMPGASGLDLLA 68

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            ++E+ P +P++ MTAH  +D+AV + + GA ++L KP + D     V  A + A + +N
Sbjct: 69  RIREQHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVALVKRANQHAQEQQN 128

Query: 121 -DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKR 179
            +           IG +  MQ V+R I   + S  ++ I GESGTGKE+ A A+H  S R
Sbjct: 129 QEAPPALTRTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHSPR 188

Query: 180 GDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLD 239
              PFIA+N AAIPKDL+ESELFGH KGAFTGAA  R+G  E ADGGTLFLDE+ +M  D
Sbjct: 189 AASPFIALNMAAIPKDLMESELFGHEKGAFTGAANLRRGRFEQADGGTLFLDEIGDMPAD 248

Query: 240 LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLH 299
            QT+LLR +  G F +VG      VDVR + AT+++    V  G+FREDL++RL VI +H
Sbjct: 249 TQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLETLVHAGKFREDLFHRLNVIRIH 308

Query: 300 LPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNV 359
           +P +  R +D+  +A   L   ++E   +   L +E  E  +   WPGNVRQL+N  R +
Sbjct: 309 IPRMSDRREDIPTLARHFLSRAAQELAVEPKLLKSETEEYLKNLPWPGNVRQLENTCRWI 368

Query: 360 VVLNEGREITLDMLPP---PLNQMSAPI---NRAL------PLAHENKVSVHEIFPLWMT 407
            V+  GRE+ +  LPP    L Q SAP+    +AL       LA      +    P +  
Sbjct: 369 TVMASGREVHISDLPPELLSLPQDSAPVTNWEQALRQWADQALARGQSNLLDSAVPAF-- 426

Query: 408 EKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKV 448
           E+  IE A++   G    AA  L    +T+ RK++    KV
Sbjct: 427 ERIMIETALKHTAGRRRDAAVLLGWGRNTLTRKIKELGMKV 467