Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  296 bits (757), Expect = 1e-84
 Identities = 167/455 (36%), Positives = 256/455 (56%), Gaps = 20/455 (4%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D   +  L  S L   D+ + I G G  A++ + + + DL++ D R+P M G  +L 
Sbjct: 7   VVDDEPKLCDLLASALGQNDVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMDGPALLA 66

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI------RK 114
            +K + P VP++ MTA+ ++  AV++MR+GA D++ KP + D L +TV  A+      R 
Sbjct: 67  EIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQFRDIMRD 126

Query: 115 ASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIH 174
            ++L+ ++D   Q +   +G S   + V + +DS   S A+I +TGESGTGKE+ A AIH
Sbjct: 127 NARLRAELDEHAQ-FDSLVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARAIH 185

Query: 175 AASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELC 234
               R DKPF+A+NCAAIP+ L+ESE+FGH KGAFTGA  +R G  + AD GTLFLDE+ 
Sbjct: 186 KHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVG 245

Query: 235 EMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLY 294
           +M L LQ K+LR +Q    + VG  + + VDVR + ATN++    V    FREDLYYRL 
Sbjct: 246 DMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLDAVANKEFREDLYYRLN 305

Query: 295 VIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQN 354
           V P+ LP LR R +D+  +A      +S   GK     SAE ++    Y WPGN+R+LQN
Sbjct: 306 VFPIPLPSLRERVEDIAPLARHFAQTLSATAGKRITGFSAEALQAMAAYHWPGNIRELQN 365

Query: 355 VLRNVVVLNEGREITLDMLP-------PPLNQMSAPINRALPLAHENKVSVHEIFPLWMT 407
            +    ++     I    LP       P    ++A ++    +  +   ++ E+      
Sbjct: 366 CVERATIVAASPVIEDIDLPGYLFASKPNQGDVTAILSDGPGIPQDLDAALAEV------ 419

Query: 408 EKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
           EK  I  A++  +G    AA  + +S  + + +L+
Sbjct: 420 EKAYILAALQESNGVQAAAAAKIGISERSFWYRLK 454