Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Two-component system response regulator protein from Variovorax sp. SCN45

 Score =  279 bits (713), Expect = 2e-79
 Identities = 167/427 (39%), Positives = 242/427 (56%), Gaps = 18/427 (4%)

Query: 26  VGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVP-IVFMTAHGSIDTAV 84
           V +G +A+++  R+  D + LD R+P M G+  L A++ +   +P ++ +TA  S    +
Sbjct: 31  VASGAEAVDTASRQRFDAVFLDHRMPGMDGLQTLAALQARMARLPPVIVLTAFSSAGNTI 90

Query: 85  EAMRHGAQDFLIKPCEADRLRVTVNNAIRK--ASKLKNDVDNKNQNYQGFIGSSQTMQAV 142
           EAMR GA D L KP   + +R  +  A+++  A+     V   + +    IG SQ M+ V
Sbjct: 91  EAMRLGAFDHLAKPISREAVREVLQRALQQHTAASSAATVTQDDDDGTDLIGPSQAMREV 150

Query: 143 YRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELF 202
           ++ I  AA++   + + GE+GTGKE+ A A+H  S R  +PF+A+NC+AIPK+L+ESELF
Sbjct: 151 HKRIGLAAANSMPVLVLGETGTGKEMVARALHRHSARAGRPFVAVNCSAIPKELLESELF 210

Query: 203 GHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMK 262
           GHV+GAFTGA  ER G   AADGG L LDE+ +M LD+Q K+LR +Q G    +GS +  
Sbjct: 211 GHVRGAFTGATGERPGCFRAADGGVLLLDEIGDMSLDVQAKILRALQEGEVTPLGSHRTV 270

Query: 263 SVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMS 322
            VDVR V AT+RD    V+EGRFREDL YRL V+ + +PPLR R  D+I +A   L   +
Sbjct: 271 KVDVRVVAATHRDLAAAVREGRFREDLLYRLDVLSIRMPPLRERLADIIPLAEHFLRRAA 330

Query: 323 KEEGKDFV---RLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNE-----GREITLDMLP 374
            +   D V    LSAE  +R   + WPGNVR+L+NV+     L       G ++ L +  
Sbjct: 331 MQGAPDAVPNKALSAEAAQRLLSHPWPGNVRELRNVMERCHALVRHRVIGGADLDLALGA 390

Query: 375 PPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSP 434
            P  + SA +  A  L  E   +V  +      E+  I  A+    GN    A  L +  
Sbjct: 391 SPAGEASATL-PADWLEGELPAAVERL------ERLLIAHALAQTQGNRAETARRLGIHR 443

Query: 435 STIYRKL 441
             +YRKL
Sbjct: 444 QLLYRKL 450