Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., Nitrogen regulation protein NR(I) from Pseudomonas putida KT2440

 Score =  289 bits (740), Expect = 1e-82
 Identities = 164/392 (41%), Positives = 230/392 (58%), Gaps = 23/392 (5%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED   + +  R  L      ++  G+ ++A E       DLI+ DLRLP   G +++ 
Sbjct: 6   IVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIATFDLIVSDLRLPGAPGTELI- 64

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIR------- 113
              +     P++ MT++ S+ +AV++M+ GA D++ KP + D +   V   +R       
Sbjct: 65  ---KLGQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQNAPA 121

Query: 114 -------KASKLKNDVDNKNQNYQ-----GFIGSSQTMQAVYRTIDSAASSKASIFITGE 161
                  +AS  K    +K          G IGS Q MQ +Y  I   A + +++ I GE
Sbjct: 122 AAPPAEPRASNGKATASDKGSAATANGEIGIIGSCQPMQDMYSKIRKVAPTDSNVLIQGE 181

Query: 162 SGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAE 221
           SGTGKE+ A A+H  S+R   P I++NCAAIP+ LIESELFGH KGAFTGA+  R G  E
Sbjct: 182 SGTGKELVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGLVE 241

Query: 222 AADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQ 281
           AADGGTLFLDE+ E+ L+ Q +LLR +Q G  ++VGS + + VDVR + AT+RD     +
Sbjct: 242 AADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKNLAK 301

Query: 282 EGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFR 341
            G+FREDLYYRL+VI L LP LR RG DV EIA   L   S   G+D +  SAE  +  R
Sbjct: 302 AGQFREDLYYRLHVIALKLPALRERGSDVNEIANVFLARQSARIGRDDLHFSAEAEQAIR 361

Query: 342 QYEWPGNVRQLQNVLRNVVVLNEGREITLDML 373
            Y WPGNVR+L+N +   V+L+E  EI+ ++L
Sbjct: 362 HYSWPGNVRELENAVERAVILSESAEISAELL 393