Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

 Score =  278 bits (711), Expect = 3e-79
 Identities = 160/458 (34%), Positives = 257/458 (56%), Gaps = 17/458 (3%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +VED   +A   R+YL+    ++ +  +   A+E I R +PD +L D  LP M+G D+L 
Sbjct: 7   VVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDLLR 66

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI-----RKA 115
            +  ++PD+ ++ MT +G+++ AV+AM+ GA  +L KP     L++T++ A+      + 
Sbjct: 67  TLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERMERT 126

Query: 116 SKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDS--------AASSKASIFITGESGTGKE 167
                + + +    Q  IG S  M  +  T+          A+     + I GE+GTGKE
Sbjct: 127 LSFYQEREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGTGKE 186

Query: 168 VCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGT 227
           + A A+H    R   PFI  NCA+IP +L+E+ELFGH KGAFT A   R G  EAADGGT
Sbjct: 187 LVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAADGGT 246

Query: 228 LFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFRE 287
           LFLDE+ EMDL LQ KLL+ ++  + +++G+ K + VD+R + ATN +  + VQ+G+FR 
Sbjct: 247 LFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGKFRR 306

Query: 288 DLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPG 347
           DL++RL +I L +P L +RG D++ +A   L   S+  GK  +R SAE       Y WPG
Sbjct: 307 DLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYSWPG 366

Query: 348 NVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFP---L 404
           NVR+L+N+L   V+L     +    L   +  +  P+ +  P+A   ++  HE  P   L
Sbjct: 367 NVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQ-PMAAMFEMPRHEPEPGTSL 425

Query: 405 WMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
              E+  + + ++  D N+ ++A  L +S   +  +++
Sbjct: 426 PDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIE 463