Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  307 bits (786), Expect = 5e-88
 Identities = 183/464 (39%), Positives = 259/464 (55%), Gaps = 29/464 (6%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D +S+  +    L    +       G + +E++  + PD++L D+R+P M G+ +L 
Sbjct: 8   VVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLK 67

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            +K++ P +P++ MTAH  +D AV A + GA D+L KP + D     V  AI   S  + 
Sbjct: 68  QIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI---SHYQE 124

Query: 121 DVDNKNQNYQG----FIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAA 176
               +N    G     IG +  MQ V+R I   + S  S+ I GESGTGKE+ A A+H  
Sbjct: 125 QQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184

Query: 177 SKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEM 236
           S R   PFIA+N AAIPKDLIESELFGH KGAFTGA T RQG  E ADGGTLFLDE+ +M
Sbjct: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244

Query: 237 DLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVI 296
            LD+QT+LLR +  G F +VG      VDVR + AT+++  + VQEG+FREDL++RL VI
Sbjct: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI 304

Query: 297 PLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVL 356
            +HLPPLR R +D+  +A   L   ++E G +   L  E      +  WPGNVRQL+N  
Sbjct: 305 RVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364

Query: 357 RNVVVLNEGREITLDMLPPPLNQMSAP------------------INRALPLAHENKVSV 398
           R + V+  G+E+ +  LP  L + +                     +RAL   H+N +S 
Sbjct: 365 RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRALRSGHQNLLS- 423

Query: 399 HEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
            E  P    E+  +  A+    G+   AA  L    +T+ RKL+
Sbjct: 424 -EAQP--ELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLK 464