Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  305 bits (782), Expect = 2e-87
 Identities = 174/453 (38%), Positives = 259/453 (57%), Gaps = 16/453 (3%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D  +V  +  +       + +    GR A+       PD++L+D+R+P+M G+  L 
Sbjct: 9   IVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALK 68

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            ++      P++ MTA+  ++TAVEA+R GA D++IKP + D L + V  A++  S +K 
Sbjct: 69  EMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS-MKK 127

Query: 121 DVDNKNQ------NYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIH 174
           ++ + +Q       +   + +S  M  + +     A S+AS+ I+GESGTGKE+ A AIH
Sbjct: 128 EIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIH 187

Query: 175 AASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELC 234
             S+R   PFI +NCAA+P+ L+ESELFGH KGAFTGA T RQG  E A+ GTL LDE+ 
Sbjct: 188 YNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIG 247

Query: 235 EMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLY 294
           EM L LQ KLLR +Q   F+++G  +   VD+R + ATNRD    V+EG FREDL+YRL 
Sbjct: 248 EMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN 307

Query: 295 VIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQN 354
           VI L LPPLR R +D+  +A   L   S E  +D + +    +     + WPGN+R+L N
Sbjct: 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSN 367

Query: 355 VLRNVVVLNEGREITLDMLPPPLNQ--MSAPINRALPLAHEN-KVSVHEIFPLWMTEKQA 411
           V+   VV+N G  I  + LPP + Q   +A   +  P+   N K  +  +      EK+ 
Sbjct: 368 VIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRV------EKRI 421

Query: 412 IEQAIEACDGNIPRAATYLDVSPSTIYRKLQTW 444
           I + +E  +GN  R A  L +S   +  KLQ +
Sbjct: 422 IMEVLEQQEGNRTRTALMLGISRRALMYKLQEY 454