Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., Quorum-sensing regulator protein F from Alteromonas macleodii MIT1002

 Score =  280 bits (715), Expect = 9e-80
 Identities = 163/427 (38%), Positives = 239/427 (55%), Gaps = 18/427 (4%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           +V+D  S+  L    L     ++  V  G+ A+  +     D++L DLR+P + G+ +  
Sbjct: 13  LVDDDKSLLRLLTIRLEGEGYEVTAVEDGQSALRKLQNENYDVVLSDLRMPGLDGLSLFE 72

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            +     D+P++ MTAHG+I  AV A + G   FL KP + D LR  +  A+ ++   + 
Sbjct: 73  EIMGIRKDIPVILMTAHGTIADAVAATQRGVFGFLPKPVDHDELRALLQKALSQSQAAQP 132

Query: 121 DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRG 180
               K+      I  S  M  V       A  + S+ I+G SGTGKE+ A AIH AS R 
Sbjct: 133 GDWAKD-----IITRSPEMLNVLDQAFRIAQREVSVLISGASGTGKELLANAIHKASNRS 187

Query: 181 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL 240
           DKPF+AINC A+P++L+ESELFGH KGAFTGA     G    ADGGTLFLDE+ +M + L
Sbjct: 188 DKPFVAINCGALPENLLESELFGHAKGAFTGAVAAHPGLFREADGGTLFLDEIGDMPMTL 247

Query: 241 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 300
           Q KLLR +Q    + VGSSK   +DVR + AT++D  KE++EG FREDLYYRL V+ L L
Sbjct: 248 QVKLLRALQERQIRPVGSSKHVDIDVRIISATHKDLHKEMEEGTFREDLYYRLNVVNLKL 307

Query: 301 PPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVV 360
           P L++R +D+  +A SLL   ++  G +  + S + +++     WPGNVRQL NV+   V
Sbjct: 308 PSLKSRSEDIPLLARSLLQQSAQRHGVNVSQFSDDAMQQLVTSSWPGNVRQLVNVVEQCV 367

Query: 361 VLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACD 420
            L +   I L +    + Q  +   ++ P   E + +          E+Q + + ++  D
Sbjct: 368 ALTQTPVIPLHL----VEQALSATKQSWPTLTEARDAF---------EQQYLHKLLKMTD 414

Query: 421 GNIPRAA 427
           GN+ RAA
Sbjct: 415 GNVTRAA 421