Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., sigma 54 dependent transcriptional activator from Agrobacterium fabrum C58

 Score =  278 bits (712), Expect = 2e-79
 Identities = 168/454 (37%), Positives = 249/454 (54%), Gaps = 49/454 (10%)

Query: 40  EPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPC 99
           E ++I+LDL +P+M G+  L AV E   DVP++  T  G IDT V+AMR GA DF++KP 
Sbjct: 48  EINVIVLDLMMPEMDGLAFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPV 107

Query: 100 EADRLRVTVNNAI---RKASKLKNDVDNKNQ--NYQGFIGSSQTMQAVYRTIDSAASSKA 154
             +R+   ++NA+   RK +K +     ++   N+   + +S  M  V      AA S  
Sbjct: 108 SPERIGAAISNALKLDRKEAKARTGRRGRSNAVNFTDIVSASPAMLRVIELAQRAAQSSI 167

Query: 155 SIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAAT 214
            + + GESG GKE+ A AI +   R +KPFI +NC AIP +L+ES LFGH KGAFTGA  
Sbjct: 168 PVVLEGESGVGKEMVARAIQSGGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATE 227

Query: 215 ERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNR 274
           +  G    ADGGTLFLDE+ ++ LD+Q KLLR +Q G  + VGS++++ V+VR + ATN+
Sbjct: 228 KHVGKFMEADGGTLFLDEIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNK 287

Query: 275 DPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLL-GFMSKEEGKDFVRLS 333
           +  +EV+EGRFREDLYYRL V P+ +P LR R +D+  +A      F ++++  + V L 
Sbjct: 288 NLIEEVKEGRFREDLYYRLNVFPITIPALRRRKEDIPHLARVFAERFSAEQKLPNPVGLD 347

Query: 334 AEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQM------------- 380
           A  +     Y+WPGN+RQL+N +   VVL++G E++    P    Q+             
Sbjct: 348 ASALALLTAYDWPGNIRQLENAVFRAVVLSQGSELSDSDFPQIALQLPEFSNGDDGDDII 407

Query: 381 SAPINRAL-------PLAHENKVSVHE-----------------------IFPLWMTEKQ 410
            +P   +L       P A E+   + E                       I  L   E++
Sbjct: 408 RSPSGSSLKLAAYSPPPAAESHAVIEEPSDISTTIYRGGNLISSTDDSGNIRKLAEIEEE 467

Query: 411 AIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTW 444
            I  A+    G + + A  L +  ST+YRKL+ +
Sbjct: 468 LIRFALRFYRGQMSQVARKLGIGRSTLYRKLKDY 501