Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., two component response regulator from Agrobacterium fabrum C58

 Score =  287 bits (735), Expect = 5e-82
 Identities = 164/466 (35%), Positives = 256/466 (54%), Gaps = 26/466 (5%)

Query: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60
           + +D A++  +    L+    D+ I          +   E DL++ D+ +PD    D+L 
Sbjct: 7   VADDDAAIRTVLNQALSRAGYDVRITSNAATLWRWVSAGEGDLVVTDVVMPDENAFDLLP 66

Query: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKN 120
            +K+  PD+P++ M+A  +  TA++A   GA D+L KP +   L   +  A+ +  +   
Sbjct: 67  RIKKARPDLPVLVMSAQNTFMTAIKASEKGAYDYLPKPFDLTELIAIIGRALSEPKRKPA 126

Query: 121 DVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRG 180
            +D+  Q+    +G S  MQ +YR +     +  ++ ITGESGTGKE+ A A+H   KR 
Sbjct: 127 KLDDDMQDGMPLVGRSAAMQEIYRVLARLMQTDLTLMITGESGTGKELVARALHDYGKRR 186

Query: 181 DKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL 240
           + PF+AIN AAIP+DLIESELFGH KGAFTGA     G  E A+GGTLFLDE+ +M +D 
Sbjct: 187 NGPFVAINMAAIPRDLIESELFGHEKGAFTGAQNRSTGRFEQAEGGTLFLDEIGDMPMDA 246

Query: 241 QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHL 300
           QT+LLR +Q G +  VG       DVR V ATN+D  + + +G FREDLYYRL V+PL L
Sbjct: 247 QTRLLRVLQQGEYTTVGGRTPIRTDVRIVAATNKDLKQSINQGLFREDLYYRLNVVPLRL 306

Query: 301 PPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVV 360
           PPLR R +D+ ++    +    ++EG +  R   E +E  + Y WPGNVR+L+N++R ++
Sbjct: 307 PPLRDRAEDIPDLVRHFIQ-TGEKEGLEGKRFETEALEVMKAYAWPGNVRELENLIRRLM 365

Query: 361 VLNEGREITLDML---------PPPLNQMSAPINRALPLAHENKVSVHEIFP-------- 403
            L     IT +++           PL++M+     +L ++   + ++ + F         
Sbjct: 366 ALYPQEVITREIIEQELQSDVPDSPLDKMAVRTG-SLTISQAVEENMRDYFASFGDGLPP 424

Query: 404 -------LWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ 442
                  L   E   I  A+ A  GN  +AA  L ++ +T+ +K++
Sbjct: 425 PGLYDRVLRELEYPLILAALTATRGNQIKAADLLGLNRNTLRKKIR 470