Pairwise Alignments

Query, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DNA-binding transcriptional regulator NtrC from Acinetobacter radioresistens SK82

 Score =  301 bits (771), Expect = 3e-86
 Identities = 166/360 (46%), Positives = 223/360 (61%), Gaps = 4/360 (1%)

Query: 30  RDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRH 89
           + A++ +    PD+IL D+R+P + G+  L  VK+ +PD+P++ MTAH  +++AV + + 
Sbjct: 37  QSALDQLMLAPPDVILTDIRMPGIDGLTFLSKVKQSNPDLPVIIMTAHSDLESAVSSYQT 96

Query: 90  GAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQG--FIGSSQTMQAVYRTID 147
           GA ++L KP + D     V  AI   SKL+          Q    IG S  MQ V+R I 
Sbjct: 97  GAFEYLPKPFDIDEALALVQRAILHISKLQQQESRVTAPIQSTEIIGESPAMQEVFRAIG 156

Query: 148 SAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKG 207
               S  ++ I GESGTGKE+ A A+H  S R +KPFIA+N AAIPKDLIE+ELFGH KG
Sbjct: 157 RLTQSHITVLINGESGTGKELVAHALHKHSPRKNKPFIALNMAAIPKDLIETELFGHEKG 216

Query: 208 AFTGAATERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVR 267
           AFTGA ++RQG  E A+GGTLFLDE+ +M  + QT+LLR +  G F +VG      VDVR
Sbjct: 217 AFTGANSQRQGRFEQANGGTLFLDEIGDMPFETQTRLLRVLADGEFYRVGGHISVKVDVR 276

Query: 268 FVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGK 327
            V AT++D  K V +GRFREDL++RL VI +H+P L  R +D+  +A   L    KE G 
Sbjct: 277 IVTATHQDLEKLVHDGRFREDLFHRLNVIRIHIPKLAHRSEDIPMLAQHFLARAGKELGV 336

Query: 328 DFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRA 387
               L  E V+  +Q  WPGNVRQL+N  R + V+  GREI  + LPP L Q+  PI RA
Sbjct: 337 SPKILRQETVQYMQQLPWPGNVRQLENTCRWLTVMITGREIYPEDLPPELKQI--PIQRA 394