Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1196 a.a., transcription-repair coupling factor from Rhodanobacter sp000427505 FW510-R12

 Score = 63.9 bits (154), Expect = 4e-14
 Identities = 78/307 (25%), Positives = 119/307 (38%), Gaps = 52/307 (16%)

Query: 42  GSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAY 101
           GS +   LA    + +   +++A +   A  L  E+K F     V +F            
Sbjct: 25  GSARALLLAEAARSHEGLLVVVARDTQRAQALEAELKIFAGGLPVLHF------------ 72

Query: 102 VPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMM-LH 160
            P  +T      S +  I   R++    L   K  V+V  V+ +     P S++    L 
Sbjct: 73  -PDWETLPYDAFSPHPEIVSQRIATLYRLPGVKRGVLVVPVATLMQRIAPRSHITGSGLV 131

Query: 161 LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDE 220
           L +G  ++     RRL    Y       E G F VRG ++DIFP  +  E  R+E+FDDE
Sbjct: 132 LAKGQKLDLATEQRRLEASGYRHVPQVAEPGDFAVRGALLDIFPMGT-AEPYRIELFDDE 190

Query: 221 IECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNK 280
           +E I  FDP T                       +R  + ++++  EL   R++ L    
Sbjct: 191 VESIRSFDPET-----------------------QRSQQPVDKV--ELLPAREFPLTGEA 225

Query: 281 L-LEEQRISQRTQFDI------EMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHD 333
             L    + +R   D+      + M E     GIE Y          E   TLFDYL  D
Sbjct: 226 AKLFRGNLRERFPIDVRHCPLYQDMKEGVTPGGIEYYLPLFF-----EQTATLFDYLADD 280

Query: 334 GLLIIDE 340
            L ++ E
Sbjct: 281 ALFVLGE 287



 Score = 35.4 bits (80), Expect = 2e-05
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 10/128 (7%)

Query: 457 KRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEV 516
           +R   +L E + +   ++R  H  +   E  +++ D     F+VLV   ++  G+D+P  
Sbjct: 871 ERTVRELEELVPD--ARIRIAHGQMPERELEQVMADFHRQRFNVLVCTTIIETGIDIPTA 928

Query: 517 ALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRREKQ 576
             + I  AD  G  +    L Q  GR  R+ + +A  Y   +    R++I    ++R + 
Sbjct: 929 NTIIIDRADHFGLAQ----LHQLRGRVGRS-HHRAYAY---LVVPDRRSITADAQKRLEA 980

Query: 577 LAYNEQRG 584
           LA  E+ G
Sbjct: 981 LASLEELG 988