Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 897 a.a., UvrABC system protein B from Xanthobacter sp. DMC5

 Score =  784 bits (2024), Expect = 0.0
 Identities = 402/673 (59%), Positives = 507/673 (75%), Gaps = 12/673 (1%)

Query: 4   AFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIIL 63
           AF + SD+QPAGDQP AIK+L    EAG   Q LLGVTGSGKTFT+A VI   QRP I+L
Sbjct: 99  AFTMKSDFQPAGDQPQAIKELCAQAEAGDRDQVLLGVTGSGKTFTMAKVIEKLQRPAIVL 158

Query: 64  APNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMR 123
           APNKTLAAQLYGE K+FFP+NAVEYFVSYYDYYQPEAYVP TDT+IEK++S+N  I++MR
Sbjct: 159 APNKTLAAQLYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKESSINEQIDRMR 218

Query: 124 LSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSR 183
            +AT++LLER D +IVASVS IYG+G  ++Y  M   ++ G+ I+QR ++  L  LQY R
Sbjct: 219 HAATRSLLERDDVIIVASVSCIYGIGSVETYSAMTFDIKVGERIDQRGLIADLVALQYKR 278

Query: 184 NDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFT 243
               F RG FRVRG+ ++IFPA  +  A RV +F DE+E I+ FDPLTG   S D+    
Sbjct: 279 IQSDFARGTFRVRGDSVEIFPAHYEDRAWRVSLFGDEVESIAEFDPLTGQ-KSGDMKSVR 337

Query: 244 IYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGF 303
           +Y  +HYVTPR  +++AI  IK+EL++R   L    +LLE QR+ QRT++D+EMM   G 
Sbjct: 338 VYAASHYVTPRPTLIQAISGIKAELKMRLDELYKMGRLLEAQRLEQRTRYDLEMMEATGS 397

Query: 304 CSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLV 363
           C+GIENYSR+L+GR  GEPPPTLF+Y+P + L+ IDESHVTVPQIGAM++GD  RK TL 
Sbjct: 398 CAGIENYSRWLTGRKPGEPPPTLFEYVPDNALVFIDESHVTVPQIGAMYRGDFRRKATLA 457

Query: 364 EFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPI 423
           E+GFRLPS +DNRPL+F+E+EA+ PQT+ VSATP  +E+ ++GG   EQV+RPTGL+DP 
Sbjct: 458 EYGFRLPSCMDNRPLRFEEWEAMRPQTVHVSATPGSWEMNQTGGVFVEQVIRPTGLIDPP 517

Query: 424 IEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDT 483
           +EVRP  TQVDDLL E R  AA   R LVT LTKRMAEDLTEYLHE+G++VRY+HSDIDT
Sbjct: 518 VEVRPARTQVDDLLGEVRAVAAKGYRTLVTVLTKRMAEDLTEYLHENGIRVRYMHSDIDT 577

Query: 484 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRA 543
           +ER+EIIRDLRLG FDVL+GINLLREGLD+PE  LVAILDADKEGFLRSE SL+QT+GRA
Sbjct: 578 IERIEIIRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRA 637

Query: 544 ARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDI 603
           ARNV+G+ +LYAD IT SM +A+ ET RRREKQ+AYN + GITP+ +K+++      GDI
Sbjct: 638 ARNVDGRVVLYADHITGSMERAMAETSRRREKQVAYNTEHGITPESVKKAI------GDI 691

Query: 604 AKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRD 663
             S  +++   V  A +AEE AA+       L+  ++ LE  M   A +L+FE AA+ RD
Sbjct: 692 LNSVYERDHVQVD-AGLAEEGAAF----GHNLKAVMADLEKRMRAAAADLDFETAARLRD 746

Query: 664 EIHQLRQQFIANS 676
           EI +L    +A S
Sbjct: 747 EIRRLEATELAVS 759