Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., excinuclease ABC subunit B from Pseudomonas simiae WCS417

 Score =  952 bits (2462), Expect = 0.0
 Identities = 478/672 (71%), Positives = 572/672 (85%), Gaps = 7/672 (1%)

Query: 5   FELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILA 64
           F+LV+ ++PAGDQP AI+Q++EG+EAGLAHQTLLGVTGSGKTF++ANVIA   RPT++LA
Sbjct: 4   FQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLA 63

Query: 65  PNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRL 124
           PNKTLAAQLYGE KAFFPNNAVEYFVSYYDYYQPEAYVP++DTFIEKDAS+N HIEQMRL
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 125 SATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRN 184
           SATKALLERKDA+IV +VS IYGLG P++YLKM+LH+ RGD ++QR++LRRL  LQY+RN
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRN 183

Query: 185 DMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTI 244
           DM F R  FRVRG+VIDI+PAESD EA+R+E+FDDE+E +S FDPLTG +  R L RFT 
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVI-RKLPRFTF 242

Query: 245 YPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFC 304
           YPK+HYVTPRE ++ AIE IK EL  R +YL  NNKL+E QR+ QRT+FD+EM+ ELG+C
Sbjct: 243 YPKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYC 302

Query: 305 SGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVE 364
           +GIENYSRYLSGR  G PPPTL+DYLP D LL+IDESHV+VPQ+GAM+KGDRSRKETLVE
Sbjct: 303 NGIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVE 362

Query: 365 FGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPII 424
           +GFRLPSALDNRP++FDE+EA++PQTIFVSATP  YE  +  G V EQ+VRPTGL+DP I
Sbjct: 363 YGFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYE-AEHAGRVIEQLVRPTGLVDPEI 421

Query: 425 EVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTV 484
           E+RP  TQVDDLLSE   R A +ER+LVTTLTKRM+EDLT+YL +HGV+VRYLHSDIDTV
Sbjct: 422 EIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTV 481

Query: 485 ERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAA 544
           ERVEIIRDLRLG FDVLVGINLLREGLDMPEV+LVAILDADKEGFLRSERSLIQT+GRAA
Sbjct: 482 ERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 545 RNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIA 604
           RN+NG+AILYAD IT SM +AI ET+RRR+KQ+A+N + GITP+ + + V DIME   + 
Sbjct: 542 RNLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIMEGATVP 601

Query: 605 KSRKQKNSKVVPLAKVAEESAAY--QVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKR 662
            SR +K      +AK AEESA Y  ++ +P ++ K I +LE  MYQ A++LEFE AAQ R
Sbjct: 602 GSRSKKRK---GMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTR 658

Query: 663 DEIHQLRQQFIA 674
           DEI +LR++ +A
Sbjct: 659 DEIGKLRERLLA 670