Pairwise Alignments

Query, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 70.5 bits (171), Expect = 4e-16
 Identities = 78/319 (24%), Positives = 131/319 (41%), Gaps = 62/319 (19%)

Query: 28  LEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVE 87
           L A    Q    + G+  +  +A   + A+R T++L  +   A +L  E+  F P+  V 
Sbjct: 9   LPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVL 68

Query: 88  YFVSY----YDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVS 143
           +F  +    YD + P                 +  I   R+++   L E    V+V  ++
Sbjct: 69  HFPDWETLPYDLFSP-----------------HQDIISQRIASLYRLPELAHGVLVVPIT 111

Query: 144 -AIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDI 202
            A++ L      L   L L  G  ++   M  RL    Y   D  +E G+F VRG +ID+
Sbjct: 112 TALHRLAPTKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDL 171

Query: 203 FPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIE 262
           FP  S +   R+++FDDEIE +  FDP                         +R ++ ++
Sbjct: 172 FPMGS-KLPYRIDLFDDEIETLRTFDP-----------------------ENQRSIDKVD 207

Query: 263 QIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIE-----MMNELG---FCSGIENYSRYL 314
            +K  L   R++ L  +  +   +   R +FD++     +  +L      +GIE Y    
Sbjct: 208 SVK--LLPAREFPLQKD-AVTRFKARFRERFDVDFRRCPIFQDLSSGITPAGIEYYLPLF 264

Query: 315 SGRAEGEPPPTLFDYLPHD 333
                 +   TLFDYLP D
Sbjct: 265 F-----DETSTLFDYLPQD 278



 Score = 39.7 bits (91), Expect = 8e-07
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 33/130 (25%)

Query: 471 GVKVRYLHSDIDTVER-----VEIIRDLRLGV---------------------FDVLVGI 504
           G +V YLH+D+ T+E+      E++ + R+ +                     F+VL+  
Sbjct: 811 GGQVYYLHNDVKTIEKCAADLAELVPEARIAIGHGQMRERELEQVMSDFYHKRFNVLIAS 870

Query: 505 NLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRK 564
            ++  G+D+P    + I  ADK G  +    L Q  GR  R+ +     YA  +T   ++
Sbjct: 871 TIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRSHHQ---AYAYLLTPPRQQ 923

Query: 565 AIDETERRRE 574
              + E+R E
Sbjct: 924 ITSDAEKRLE 933